Debswapna Bhattacharya

  


 2018 


Rahul Alapati, Debswapna Bhattacharya.
clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons.
ACM-BCB, Washington, D.C. USA (2018).
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Chen Keasar, Liam McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giedo, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena lusarz, Rafal lusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popovi, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Odziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli.
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Nature Scientific Reports, 8:9939 (2018).
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 2017 


Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng.
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.
Bioinformatics, 33 (4): 586-588 (2017).
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Badri Adhikari, Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng.
Assessing Predicted Contacts for Building Protein Three-Dimensional Models.
Springer, Methods in Molecular Biology, 1484: 115-126 (2017).
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 2016 


Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng.
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling.
Bioinformatics, 32 (18): 2791-2799 (2016).
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Debswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, Jianlin Cheng.
3Drefine: An Interactive Web Server for Efficient Protein Structure Refinement.
Nucleic Acids Research, Web Server Issue, 4 (W1): W406-W409 (2016).
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Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng.
FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling.
Bioinformatics, 32 (13): 2059-2061 (2016).
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Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng.
DeepQA: improving the estimation of single protein model quality with deep belief networks.
BMC Bioinformatics, 17:495 (2016).
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Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng.
ConEVA: a Toolbox for Comprehensive Assessment of Protein Contacts.
BMC Bioinformatics, 17:517 (2016).
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 2015 


Debswapna Bhattacharya, Jianlin Cheng.
De novo portein conformational sampling using a probabilistic graphical model.
Nature Scientific Reports, 5:16332 (2015).
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Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng.
Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11.
Proteins: Structure, Function, and Bioinformatics, 84(S1): 247-259 (2015).
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Badri Adhikari, Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng.
CONFOLD: Residue-residue contact guided ab initio protein folding.
Proteins: Structure, Function, and Bioinformatics, 83(8): 1436-1449 (2015).
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Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng.
Large-scale model quality assessment for improving protein tertiary structure prediction.
ISMB/ECCB, Dublin, Ireland (2015).
Bioinformatics, 31(12): i116-i123 (2015).
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 2014 


Jilong Li, Debswapna Bhattacharya, Renzhi Cao, Badri Adhikari, Xin Deng, Jesse Eickholt, Jianlin Cheng.
The MULTICOM Protein Tertiary Structure Prediction System.
Springer, Methods in Molecular Biology (2014).
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 2013 


Debswapna Bhattacharya, Jianlin Cheng.
i3Drefine software for protein 3D structure refinement and its assessment in CASP10.
PLOS ONE, 8(7): e69648 (2013).
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Debswapna Bhattacharya, Jianlin Cheng.
Protein Structure Refinement by Iterative Fragment Exchange.
ACM-BCB, Washington, D.C. USA, 106-114 (2013).
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Badri Adhikari, Xin Deng, Jilong Li, Debswapna Bhattacharya, Jianlin Cheng.
A Contact-Assisted Approach to Protein Structure Prediction and Its Assessment in CASP10.
AAAI, Washington, USA (2013).
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Debswapna Bhattacharya, Jianlin Cheng.
3Drefine: Consistent Protein Structure Refinement by Optimizing Hydrogen Bonding Network and Atomic Level Energy Minimization.
Proteins: Structure, Function, and Bioinformatics, 81(1): 119-131 (2013).
[PDF] [Support Information] [Server] [Top 10 most cited articles in 2013 Proteins]